Good news for R
Users.
GUI programming now available with R!
A few days back the RStudio blog announced Shiny, a new product for easily creating interactive web applications (
http://www.rstudio.com/shiny/). I wanted to compare this new framework to one I’ve worked on,
gWidgetsWWW2.rapache – a version of the gWidgets API for use with Jeffrey Horner’s
rapache module for the Apache web server (available at GitHub). The
gWidgets API has a similar aim to make it easy for R users to create interactive applications.
I don’t want to worry here about deployment of apps, just the writing side. The shiny package uses websockets to transfer data back and forth from browser to server. Though this may cause issues with wider deployment, the industrious RStudio folks have a hosting program in beta for internet-wide deployment. For local deployment, no problems as far as I know – as long as you avoid older versions of internet explorer.
Now, Shiny seems well suited for applications where the user can parameterize a resulting graphic, so that was the point of comparison. Peter Dalgaard’s tcltk package ships with a classic demo tkdensity.R. I use that for inspiration below. That GUI allows the user a few selections to modify a density plot of a random sample.
gWidgetsWWW2
We’ll start with a gWidgets approach and work our way to the shiny code. A basic GUI can be generated with the following code:
width <- 600; height <- 480
## The plot commands. Uses GUI objects defined below
make_plot <- function(...) {
y <- get(svalue(distribution))(svalue(size))
plot(density(y, bw=svalue(bandwidth)/100, kernel=svalue(kernel)))
points(y, rep(0, svalue(size) ))
}
update_plot <- function(...) {
f <- tempfile()
require(canvas)
canvas(f, width=width, height=height)
make_plot()
dev.off()
svalue(cnv) <- f ## update canvas widget
}
## The layout
w <- gwindow("tkdensity example")
gstatusbar("Powered by gWidgetsWWW2.rapache and rapache", cont=w)
## containers
bl <- gborderlayout(cont=w)
fl <- gformlayout(cont=bl, where="west")
## controls
distribution <- gcombobox(data.frame(value=c("rnorm", "rexp"),
labels=c("Normal", "Exponential"),
stringsAsFactors=FALSE),
cont=fl, label="distribution")
kernel <- gcombobox(c("gaussian", "epanechnikov", "rectangular",
"triangular", "cosine"),
cont=fl, label="kernel")
size <- gcombobox(c(5,50, 100, 200, 300),
coerce.with="as.numeric",
cont=fl, label="size")
bandwidth <- gslider(0.05*100, 2*100, by=0.05*100, value=1*100,
width=250,
coerce.with="as.numeric",
cont=fl, label="bandwidth")
refresh <- gbutton("refresh",
cont=fl, label="")
cnv <- gcanvas(cont=bl, where="center", width=width, height=height)
## connect controls
for(i in list(kernel, size, bandwidth, refresh))
addHandlerChanged(i, update_plot)
|
All right, that may look like a lot, but lots of people have used gWidgets to write such GUIs. They aren’t that hard. basically there are three parts:
- The definition of the controls and their layout that comprise the
user interface.
- The definition of some callback to create the graphic when a control
is updated.
- Some means to specify when to invoke this call back.
The gWidgets API is meant to be cross-toolkit, but this is only mostly true. In the above we use a few web-specific features, including the canvas package to provide a JavaScript canvas for drawing R graphics.
Manipulate
This particular example would be really easy were we able to use RStudio’s manipulate package. That is only for RStudio users though. Well, not really. There is a simple map available in thegWidgetsWWW2.rapache package that allows us to easily use that specification. Here is the code:
## load in map for manipulate -> gWidgets
source(system.file("demo", "manipulate.R", package="gWidgetsWWW2.rapache"), local=TRUE)
w <- gwindow("Manipulate example")
gstatusbar("Powered by gWidgetsWWW2.rapache and rapache", cont=w)
manipulate(
{
y <- get(distribution)(size)
plot(density(y, bw=bandwidth/100, kernel=kernel))
points(y, rep(0, size))
},
##
distribution=picker("Normal"="rnorm", "Exponential"="rexp"),
kernel=picker("gaussian", "epanechnikov", "rectangular",
"triangular", "cosine"),
size=picker(5, 50, 100, 200, 300),
bandwidth=slider(0.05 * 100, 2.00 * 100, step=0.05 * 100, initial=1* 100), # integers needed
button=button("Refresh"),
## gWidgetsWWW2.rapache extras
container=w,
device="svg", # svg or canvas or png
delay=1000 # delay to let data load for combo boxes
)
|
Okay, I admit. I’m a fan of
manipulate and it really is a perfect way to specify an interface as straightforward as this. This one is an example in the
gWidgetsWWW2.rapache package and you can see it in action at
http://www.math.csi.cuny.edu/gw/ex-manipulate.R (though this redirects to a private server which is often not online). The
manipulateinterface handles the layout of the controls and the invocation of the callback, all you add is an expression to plot and a specification of
the controls.
Shiny
Now for Shiny. We noted above there are really three pieces to writing this app, with Shiny we only need to worry about two: the definition and layout of the user interface, and the specification of how the resulting graphic is made. For this, we write two functions: ui.R and server.R.
The ui.R files is used to layout the interface. Here is ours:
library(shiny)
shinyUI(pageWithSidebar(
# Application title
headerPanel("tkdensity"),
# Sidebar with a slider input for number of observations
sidebarPanel(
selectInput("distribution", "Distribution:",
choices = c("Normal"="rnorm", "Exponential"="rexp")),
selectInput("kernel", "Kernel:",
choices = c("gaussian", "epanechnikov", "rectangular",
"triangular", "cosine")),
selectInput("size", "Size:",
choices = c(5,50, 100, 200, 300)),
sliderInput("bandwidth", "bandwidth:",
min = 0.05,
max = 2,
value = 1)
),
# Show a plot of the generated distribution
mainPanel(
plotOutput("distPlot")
)
))
|
There are a few containers (“panels”) and a few controls specified (“inputs”). The basic usage of shiny involves just a handful of each and they are easy to learn. The above code simply makes a header, puts four controls into a side panel and in the main panel readies a place to display our plots. The name distPlot is odd because I stole this basic set up from one of shiny‘s examples and made just minor changes.
The server.R file is not difficult either. We need to make the graphic so that it displays. Here it is:
library(shiny)
shinyServer(function(input, output) {
make_plot <- function(distribution, size, bandwidth, kernel) {
y <- get(distribution)(size)
plot(density(y, bw=bandwidth, kernel=kernel))
points(y, rep(0, size))
}
output$distPlot <- reactivePlot(function() {
make_plot(input$distribution, input$size, input$bandwidth, input$kernel)
})
})
|
Again, this is only slightly modified from an example. The input object is not a list or an environment, but we can extract the values associated with the user interface as though it were. In the above we see the distribution, size, bandwidth and kernel values are passed along to the make_plot call. The only new thing here, besides that, is the magic way we create a plot (passing a function as a call back to reactivePlot and assigning it to distPlot in the output object). The shiny package takes care of the third part of our GUI, using this “reactive” programming style to synchronize various parts of
the interface.
Want to see it at work? Well fire up your copy of shiny and run it from a GitHub gist:
require(shiny)
shiny:::runGist("4009017")
|
Before you gloss over the above lines, think how neat this is. Just as you can install packages from GitHub within an R session through the devtools package, you can run shiny apps within R from GitHub with the runGist function. This is an awesome feature for deploying interactive web apps for local usage.
I think you’ll see, if you compare, for this task the user experience is nicer with
shiny than that of
gWidgetsWWW2.rapache. The specification of the GUI is easiest with the
manipulate style, but using
shiny wasn’t difficult. I personally like very much the use of the “bootstrap” CSS libraries (
http://twitter.github.com/bootstrap/), as opposed to the ExtJS CSS (
http://www.sencha.com/products/extjs/). The interface looks very modern. (Not only looks, the slider is much better than that in
gWidgetsWWW2.rapache, where the underlying control only wants integer values.) Though the
gWidgetsWWW2.rapache package might have more controls and more layout options than the basic use of
shiny, I can see that there will be a huge number of great
shiny apps written. Within its range of use, it is a great choice for easily making R-driven web applications.
To Read this :
Posted by Thiloka Bogahalanda
